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The H+ Summit was this weekend at Harvard and was live broadcast on the web. In a while, H+'ll have sessions on line. Until then, a few links:

Of random interest:

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Notes for Today: March 6, 2010

Back when I started my blog, I would have entries that were simply lists of links that I'd come across and thought worth sharing or brief events during the day.  Never mind "sharing with whom."  The impetus to share, presuming some sort of tenuous permanence seems like a decent rationale for blogging.

Today, one of the tabs open was a Wolfram|Alpha preview search for Academy Award nominations for the recent Star Trek movie (makeup, sound editing, sound mixing, and visual effects).  That lead me to the Star Trek wikipedia page where I read about some of the backstories on casting, etc.  I spent a few hours rewatching that awesome movie.

Saturday's my day to work myself into a little frenzy about savings etc, so I listened to Marketplace Money and called TiVo to follow up on cancelling my subscription from a long while back and that an acceptable refund was issued.  I still sort of want one of the new super cool HD TiVo Premiers because Comcast's DVR is just awful.

Later, I watch the latest episode of Caprica and lamented (privately) that the Facebook fan page for Caprica showed the closing climactic scene of Friday's episode as a preview last week, pretty much making episode 6 literally anticlimactic. I also looked up the word apotheosis that Sister Clarisse likes to say.

I read a recent first hand report of someone who attended Singularity U's executive conference and got to thinking about small-cap biotech ETFs as the next investment bubble.  A bit of Googling came to a decent seekingalpha article that mentioned XBI, BBH, and FBT.  Apparently, the Chinese government's bought $96m worth of Illumina genetic sequencing machines (@ $750k a pop) - the same machines used by personal genomics companies 23andme, decodeme, and counsyl. Will the new phrase be "cheap chinese genomes"?

Back to Singularity U, I watched Dr. Daniel Reda's talk on Biotechnology Fundamentals and wondered if I could memorize the RNA codes for all the amino acids. May be.  It's got to be like learning hex or anything else computational.

Optimization efficacy of evolutionary techniques

Natural selection
  • Slow!
  • Optimized for selecting the best replicators
  • Builds on previous adaptations (doesn't optimize best adaptations)
  • Optimization principle: Just good enough - ie selected for whatever's just good enough to pass on genes, not for any longer (healthy life, etc.)
Human Intelligence
  • Recombinant DNA technology - cut & paste via enzyme restriction endonuclease + ligase
  • DNA printer - writes DNA
  • http://www.bio-era.net/
Recursive AI


 If you haven't seen Harvard's BioVisions animation of the cell, you should.




Protein folding
    Game: http://fold.it/portal/

http://online.wsj.com/article/SB124207326903607931.html

"Killer Apps"
  • Drug metabolism
  • High-risk drugs

Edit, 04/25/2010 (DNA Day)

The new machine, the HiSeq2000, will begin shipping next month with a cost of $690,000 vs. $500,000 for Illumina's current model. It is being unveiled today at J.P. Morgan's investment conference in San Francisco. The Beijing Genomics Institute will be the first customer, purchasing 128 of the new machines.
Illumina's Cheap New Gene Machine Matthew Herper, 01.12.10, 03:00 PM EST
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Once More Into the Security Breach, an op-ed by wirter Kathyrn Harrison on how flying's so secure.

World of Warcraft 'Code Monkey' song - m4a (iTunes/QuickTime) format. Humor.

programming on atari - an image of the glory days of programming when gravity didn't exist.

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I believe the US government has the right and ability to detail the categorization of the extra-judicial designation of "enemy combatant." I also do believe that most people at Guantanmo are "innocent" but that the tragedies of their individual situations, which threatens to overshadow our pursuit of justice, are orthogonal to the legal issue of their designation.

It may not have been consistent with the precedent established by the Bush administration in further detailing the “enemy combatant” designation when it was decided to apply military tribunals as a method of trial to said designees as a rapid and easily implementable method by the President (ie, no need to confer with the other branches of government, Legislative or Judicial, due to the inherent extra-judicial nature of the EC designation). It would seem that a more consistent, albeit further inflammatory, path would've been to create an extra-judicial executive sponsored body of justice possibly based upon, but not exactly, existing military tribunal process.

The judicial branch is definitely concerned over matters judicial and especially concerned when their purview is sidestepped by something like the enemy combatant designation. It's also bit unsettling when legalities place areas beyond the actual, direct reach of the judicial branch. Lawyers on both sides of the issue seem to be doing the right thing by approaching the issue via one of our cornerstones of justice, habeas corpus. Whether habeas was respected by the tribunal process in place is in effect what this ruling narrowly addresses.

Their ruling today answered the question as to whether the administration's executive branch utilization of the military's tribunal system was constitutional, legal, and sufficient to adhere with their previous ruling that enemy combatants must be given a trial. They said that the President is not allowed to use the established and formal legal system of military tribunals as a means of justice. That's not what they're designed for. Enemy combatants are outside established precedent so, in essence, an existing form of adjudication cannot be used. I have to carefully read the ruling, but it may imply that even they themselves, the judicial branch, aren't the appropriate venue. This would further confirm the extra-judicial nature of the enemy combatant designation.

The question still remains as to what to do with these detainees. I'm comping up a punnet square of options for reference.

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As per usual, I'm in the middle (or beginning) of a bunch of books, and Ray Kurtzweil's Singularity is Near is one of them. I'm a big fan of having excuses to ignore what passes as "work" these days, so I'm a bit sad that I just found out about The Singularity Summit going on at Stanford in a few days. I totally would've been up for an excuse to ditch this and pretend to be really smart.  (My last escapist travel / personal betterment failure was the Ruby on Rails conference in Vancouver.)

Yaay for GNR (not guns & roses - Genetics, Nanotech and Robotics!)

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Nicholas Negroponte's One Laptop Per Child- the $100 Laptop project & Internet Governance

Today, Nicholas Negroponte (brother of our very own DNI, and famous for a very long time as the head of the renown MIT Media Lab) announced the hand-crank powered $100 laptop at the World Summit on Information Society in Tunisia as part of his "One Laptop Per Child" effort to give cheap laptop computers to kids in the 3rd world.  Oh yeah, it's got mesh wifi (for local voip potential), loonix os, 500MHz AMD, 1GB flash mem, and get this: development tools like make and a C compiler.  Yeah, that's right, 3rd world flashmob developers: watch out India!  Wired

"This is truly a moving experience," said UN secretary-general Kofi Annan, who showed up at the beginning of the event. "It's also a moving expression of global solidarity and corporate citizenship." - ZDnet

I love Kofi, but that's just the most vague diplomatic back-pattery I've ever read. How about a "That's way cool, what a crazy idea!" or "WiFi? No ***? How many can I pre-order?," Kofi? Google, Rupert Murdoch, Apple and Microsoft have all expressed interest or are contributing to Negroponte's not-for-profit. (What, no Bono?) BBC  Anyone else find it ironic that the pr picture has a white kid's hands, when the deployment'll be going to mostly browntowner kids (those that are trapped, peering out)?

Sad, but $100's like 1/10th of a family's income in Africa. I wonder how soon we'll see Nigerian scammers putting these things up on eBay? Still, I think this is not only a cool technical and organizational experiment, but it's an attempt at doing something good.

My favorite thing about the whole Internet stuff in Tunisia is that they're almost as fascistly restrictful of access to the outside Internet as China. Human Rights Watch published a report "False Freedom: Online Censorship in the Middle East and North Africa" which cites Tunisia as a country which details its citizens for Internet use (a journalist comparing Tunisia's president to Ariel Sharon is serving 3 years in jail on charges of "insulting the judiciary") and blocks websites that talk about Tunisa's human rights abuses. ('That kid was downloading lawyer jokes on his lime green laptop, 15 years in jail!') Good call, UN.

Also, just before the start of the same conference, the UN wasn't able to wrest control of ICANN away from the United States and turn it into a bureaucratic quagmire of rotating boards headed up by Robert Mugabe, as proposed in the UN's Working Group on Internet Governance (WGIG). Mugabe, the dictator of Zimbabwe, had the balls to call the existing system of Internet governance a form of neocolonialism. Foreign Policy, 11/2005. I can just imagine the new tld's that'd be created: .mugaberules .ushaters, kofi.kofi.woot.woot.woot (that last one's a newsgroup, not a tld, sorry)

If you're interested in the sweet UN-style resolution that was adopted that basically said "darn, we lost, but we're going to make a non-relevant advisory board anyway," see here.

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Steve Jobs kicks ass - always has, always will.
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Other places that have Notes content for the iPod:
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GmailDrive - word.
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I want to put the CIA Factbook on my iPod. I love the CIA Factbook so much people have told me I should marry it. I snapped back that they were poopypants and that shut them up something fierce. Here's a iPod notes converter, an article, a site, and the iPod Note Reader Guide (2003) from Apple.

Now I have ideas on the brain: Notecasting anyone?

Other things I bumped into while researching iPod Notes:

http://www.hackaday.com/
http://www.bestcigarette.us/

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Mercedez-Benz Mix Tape - oddly hip iPodLounge Article on free music

before/after pictures
tsunami blog

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Firefox Extensions and Themes I like:

Firefox extension tutorial

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DARPA TIDES presentation
DARPA TIDES
Epson Announces Advanced Model of the World's Lightest Micro-Flying Robot
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Future Now - Emerging technologies and their social implications
TalkingPointsMemo
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http://sauce.cnice.mecd.es/~smarti4/rpaz.htm suondmag http://memri.org/bin/articles.cgi?Page=archives&Area=sd&ID=SP60103#_edn1 "Voice of Jihad" http://www.jihadwatch.org/archives/000020.php http://news.bbc.co.uk/1/hi/uk/1823045.stm http://www.jihadwatch.org/archives/000756.php
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British Jihad Inside Out's documentary on how the British muslims became succeptible to Salafist tendencies Q News, a mainstream muslim magazine (pdf) 01, 03, 04/2004
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Re-Interpreting the XML Pipeline Note, pdf, H.S.Thompson (html, slides, XML 2003) Thompson uses the word "militate" which I find interesting.
XML Pipeline Definition Language Version 1.0, W3C Note
XPipe, open source, latest version 02/2002
Pipeline Processing, NekoStyle, Andy Clark's Apache Xerces XNI tools
Some SAX Design Patterns, excerpt from book Professional XML
Keeping Up With James Clark, Ogbuji, IBM DW article, 07/2002
Best Practices for Representing XML in the .NET Framework, Obasanjo, MSDN, 03/2004
Distributed XML Processing Models, Mark Nottingham, Akamai
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WiX on SourceForge... Microsoft Open Source? Looking at some of the Microsoft Community Blogs I read an intersting one from a onenote team member made me think of looking at the product.
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Inside Eclipse 3.0, from Penton Technology Media's EclipseNews
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Pardee RAND Graduate School
RAND Quality Standards
The New U.S. Proposal for a Greater Middle East Initiative: An Evaluation, Saban Center Middle East Memo #2, May 10, 2004, Tamara Cofman Wittes, Research Fellow, Saban Center for Middle East Policy
Middle East Policy Council archives
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Transitional Administrative Law
Broader Middle East and Northern Africa Initiative
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The US's findings US Senate Cmtee on Intelligence's Report conclusions, from above rpt
The UK's findings Lord Butler's Statement Lord Butler's Report
UK Dossier on Iraq, September 2003
UK Dossier on Iraq, February 2003
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ASP.NET Forums Toolkit
.Text blog
nGallery
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